The NF-PCGR (Nextflow-based Pipeline for Clinical Genome Reports) is an open-source pipeline for generating clinical genome reports using the PCGR framework. During this hackathon, we aim to update the functionality of NF-PCGR and try to complete the integration with sarek.
Goal
By the end of the hackathon, we aim to achieve the following:
- Integrate new variant annotation sources to improve reporting.
- Optimize pipeline execution for better performance.
- Start the integration with nf-core sarek
How to Get Involved
If you’re interested in contributing, check out the NF-PCGR repository for existing issues and ideas. Feel free to join our Slack discussions and submit pull requests!
Let’s collaborate to improve NF-PCGR and make it a powerful tool for clinical genomics!
category
pipelines
