This project aims to improve and optimize the nf-core/bacass pipeline by enhancing assembly strategies and exploring new analysis steps.

We will focus on:

  1. Benchmarking and testing new tools to improve genome assembly strategies.
  2. Focusing on long-read and hybrid assembly approaches to enhance the quality of results.
  3. Identifying additional improvements discussed in this GitHub issue.

We welcome contributors of all experience levels.

Goal

  1. Optimize assembly strategies by integrating and testing new tools.
  2. Improve support for long-read and hybrid genome assembly.
  3. Explore additional enhancements based on community discussions.
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